diff --git a/editor/plugins/tiles/tile_set_editor.cpp b/editor/plugins/tiles/tile_set_editor.cpp
index c0c4f2bcdd8..53c2d4de515 100644
--- a/editor/plugins/tiles/tile_set_editor.cpp
+++ b/editor/plugins/tiles/tile_set_editor.cpp
@@ -462,6 +462,35 @@ void TileSetEditor::_move_tile_set_array_element(Object *p_undo_redo, Object *p_
 	}
 
 #define ADD_UNDO(obj, property) undo_redo_man->add_undo_property(obj, property, obj->get(property));
+
+	// Add undo method to adding array element.
+	if (p_array_prefix == "occlusion_layer_") {
+		if (p_from_index < 0) {
+			undo_redo_man->add_undo_method(ed_tile_set, "remove_occlusion_layer", p_to_pos < 0 ? ed_tile_set->get_occlusion_layers_count() : p_to_pos);
+		}
+	} else if (p_array_prefix == "physics_layer_") {
+		if (p_from_index < 0) {
+			undo_redo_man->add_undo_method(ed_tile_set, "remove_physics_layer", p_to_pos < 0 ? ed_tile_set->get_physics_layers_count() : p_to_pos);
+		}
+	} else if (p_array_prefix == "terrain_set_") {
+		if (p_from_index < 0) {
+			undo_redo_man->add_undo_method(ed_tile_set, "remove_terrain_set", p_to_pos < 0 ? ed_tile_set->get_terrain_sets_count() : p_to_pos);
+		}
+	} else if (components.size() >= 2 && components[0].begins_with("terrain_set_") && components[0].trim_prefix("terrain_set_").is_valid_int() && components[1] == "terrain_") {
+		int terrain_set = components[0].trim_prefix("terrain_set_").to_int();
+		if (p_from_index < 0) {
+			undo_redo_man->add_undo_method(ed_tile_set, "remove_terrain", terrain_set, p_to_pos < 0 ? ed_tile_set->get_terrains_count(terrain_set) : p_to_pos);
+		}
+	} else if (p_array_prefix == "navigation_layer_") {
+		if (p_from_index < 0) {
+			undo_redo_man->add_undo_method(ed_tile_set, "remove_navigation_layer", p_to_pos < 0 ? ed_tile_set->get_navigation_layers_count() : p_to_pos);
+		}
+	} else if (p_array_prefix == "custom_data_layer_") {
+		if (p_from_index < 0) {
+			undo_redo_man->add_undo_method(ed_tile_set, "remove_custom_data_layer", p_to_pos < 0 ? ed_tile_set->get_custom_data_layers_count() : p_to_pos);
+		}
+	}
+
 	// Save layers' properties.
 	List<PropertyInfo> properties;
 	ed_tile_set->get_property_list(&properties);
@@ -543,7 +572,7 @@ void TileSetEditor::_move_tile_set_array_element(Object *p_undo_redo, Object *p_
 	}
 #undef ADD_UNDO
 
-	// Add do method.
+	// Add do method to add/remove array element.
 	if (p_array_prefix == "occlusion_layer_") {
 		if (p_from_index < 0) {
 			undo_redo_man->add_do_method(ed_tile_set, "add_occlusion_layer", p_to_pos);