diff --git a/doc/classes/EditorExportPlugin.xml b/doc/classes/EditorExportPlugin.xml
index 436f471e5d3..3e2b3ea1118 100644
--- a/doc/classes/EditorExportPlugin.xml
+++ b/doc/classes/EditorExportPlugin.xml
@@ -313,7 +313,7 @@
 		<method name="skip">
 			<return type="void" />
 			<description>
-				To be called inside [method _export_file]. Skips the current file, so it's not included in the export.
+				To be called inside [method _export_file], [method _customize_resource], or [method _customize_scene]. Skips the current file, so it's not included in the export.
 			</description>
 		</method>
 	</methods>
diff --git a/editor/export/editor_export_platform.cpp b/editor/export/editor_export_platform.cpp
index d2a187bcfd5..509bb707823 100644
--- a/editor/export/editor_export_platform.cpp
+++ b/editor/export/editor_export_platform.cpp
@@ -791,6 +791,10 @@ String EditorExportPlatform::_export_customize(const String &p_path, LocalVector
 		if (!customize_scenes_plugins.is_empty()) {
 			for (Ref<EditorExportPlugin> &plugin : customize_scenes_plugins) {
 				Node *customized = plugin->_customize_scene(node, p_path);
+				if (plugin->skipped) {
+					plugin->_clear();
+					return String();
+				}
 				if (customized != nullptr) {
 					node = customized;
 					modified = true;
@@ -824,6 +828,10 @@ String EditorExportPlatform::_export_customize(const String &p_path, LocalVector
 		if (!customize_resources_plugins.is_empty()) {
 			for (Ref<EditorExportPlugin> &plugin : customize_resources_plugins) {
 				Ref<Resource> new_res = plugin->_customize_resource(res, p_path);
+				if (plugin->skipped) {
+					plugin->_clear();
+					return String();
+				}
 				if (new_res.is_valid()) {
 					modified = true;
 					if (new_res != res) {
@@ -1139,6 +1147,10 @@ Error EditorExportPlatform::export_project_files(bool p_main_pack, const Ref<Edi
 			// Before doing this, try to see if it can be customized.
 
 			String export_path = _export_customize(path, customize_resources_plugins, customize_scenes_plugins, export_cache, export_base_path, false);
+			if (export_path.is_empty()) {
+				// Skipped from plugin.
+				continue;
+			}
 
 			if (export_path != path) {
 				// It was actually customized.