diff --git a/drivers/gles3/rasterizer_scene_gles3.cpp b/drivers/gles3/rasterizer_scene_gles3.cpp
index e4bcc424b3a..3cb58f34db6 100644
--- a/drivers/gles3/rasterizer_scene_gles3.cpp
+++ b/drivers/gles3/rasterizer_scene_gles3.cpp
@@ -145,6 +145,7 @@ void RasterizerSceneGLES3::_geometry_instance_dependency_changed(Dependency::Dep
 		case Dependency::DEPENDENCY_CHANGED_MULTIMESH:
 		case Dependency::DEPENDENCY_CHANGED_SKELETON_DATA: {
 			static_cast<RenderGeometryInstance *>(p_tracker->userdata)->_mark_dirty();
+			static_cast<GeometryInstanceGLES3 *>(p_tracker->userdata)->data->dirty_dependencies = true;
 		} break;
 		case Dependency::DEPENDENCY_CHANGED_MULTIMESH_VISIBLE_INSTANCES: {
 			GeometryInstanceGLES3 *ginstance = static_cast<GeometryInstanceGLES3 *>(p_tracker->userdata);
@@ -160,6 +161,7 @@ void RasterizerSceneGLES3::_geometry_instance_dependency_changed(Dependency::Dep
 
 void RasterizerSceneGLES3::_geometry_instance_dependency_deleted(const RID &p_dependency, DependencyTracker *p_tracker) {
 	static_cast<RenderGeometryInstance *>(p_tracker->userdata)->_mark_dirty();
+	static_cast<GeometryInstanceGLES3 *>(p_tracker->userdata)->data->dirty_dependencies = true;
 }
 
 void RasterizerSceneGLES3::_geometry_instance_add_surface_with_material(GeometryInstanceGLES3 *ginstance, uint32_t p_surface, GLES3::SceneMaterialData *p_material, uint32_t p_material_id, uint32_t p_shader_id, RID p_mesh) {
diff --git a/servers/rendering/renderer_rd/forward_clustered/render_forward_clustered.cpp b/servers/rendering/renderer_rd/forward_clustered/render_forward_clustered.cpp
index 93c741fd346..26ab01d84f7 100644
--- a/servers/rendering/renderer_rd/forward_clustered/render_forward_clustered.cpp
+++ b/servers/rendering/renderer_rd/forward_clustered/render_forward_clustered.cpp
@@ -3771,6 +3771,7 @@ void RenderForwardClustered::_geometry_instance_dependency_changed(Dependency::D
 		case Dependency::DEPENDENCY_CHANGED_MULTIMESH:
 		case Dependency::DEPENDENCY_CHANGED_SKELETON_DATA: {
 			static_cast<RenderGeometryInstance *>(p_tracker->userdata)->_mark_dirty();
+			static_cast<GeometryInstanceForwardClustered *>(p_tracker->userdata)->data->dirty_dependencies = true;
 		} break;
 		case Dependency::DEPENDENCY_CHANGED_MULTIMESH_VISIBLE_INSTANCES: {
 			GeometryInstanceForwardClustered *ginstance = static_cast<GeometryInstanceForwardClustered *>(p_tracker->userdata);
@@ -3785,6 +3786,7 @@ void RenderForwardClustered::_geometry_instance_dependency_changed(Dependency::D
 }
 void RenderForwardClustered::_geometry_instance_dependency_deleted(const RID &p_dependency, DependencyTracker *p_tracker) {
 	static_cast<RenderGeometryInstance *>(p_tracker->userdata)->_mark_dirty();
+	static_cast<GeometryInstanceForwardClustered *>(p_tracker->userdata)->data->dirty_dependencies = true;
 }
 
 RenderGeometryInstance *RenderForwardClustered::geometry_instance_create(RID p_base) {
diff --git a/servers/rendering/renderer_rd/forward_mobile/render_forward_mobile.cpp b/servers/rendering/renderer_rd/forward_mobile/render_forward_mobile.cpp
index 816248567b6..4c228ba08ce 100644
--- a/servers/rendering/renderer_rd/forward_mobile/render_forward_mobile.cpp
+++ b/servers/rendering/renderer_rd/forward_mobile/render_forward_mobile.cpp
@@ -2674,6 +2674,7 @@ void RenderForwardMobile::_geometry_instance_dependency_changed(Dependency::Depe
 		case Dependency::DEPENDENCY_CHANGED_MULTIMESH:
 		case Dependency::DEPENDENCY_CHANGED_SKELETON_DATA: {
 			static_cast<RenderGeometryInstance *>(p_tracker->userdata)->_mark_dirty();
+			static_cast<GeometryInstanceForwardMobile *>(p_tracker->userdata)->data->dirty_dependencies = true;
 		} break;
 		case Dependency::DEPENDENCY_CHANGED_MULTIMESH_VISIBLE_INSTANCES: {
 			GeometryInstanceForwardMobile *ginstance = static_cast<GeometryInstanceForwardMobile *>(p_tracker->userdata);
@@ -2688,6 +2689,7 @@ void RenderForwardMobile::_geometry_instance_dependency_changed(Dependency::Depe
 }
 void RenderForwardMobile::_geometry_instance_dependency_deleted(const RID &p_dependency, DependencyTracker *p_tracker) {
 	static_cast<RenderGeometryInstance *>(p_tracker->userdata)->_mark_dirty();
+	static_cast<GeometryInstanceForwardMobile *>(p_tracker->userdata)->data->dirty_dependencies = true;
 }
 
 /* misc */